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[mothur.git] / suffixtree.hpp

diff --git a/suffixtree.hpp b/suffixtree.hpp
index 387d4bdca798f423d4d86a123c5a552321412048..ab262ba86295ea964d3857e40d387961466e7d11 100644 (file)
--- a/suffixtree.hpp
+++ b/suffixtree.hpp
@@ -27,8 +27,6 @@
 
 #include "mothur.h"
 
-using namespace std;
-
 class SuffixNode;
 
 //********************************************************************************************************************
@@ -40,10 +38,11 @@ public:
        ~SuffixTree();
 //     SuffixTree(string, string);
 
-       void loadSequence(Sequence*);
+       void loadSequence(Sequence);
        string getSeqName();
        void print();   
        int countSuffixes(string, int&);
+       int countSuffixes(string);      
 
 private:       
        void addPrefix(int);