#include "mothur.h"
#include "database.hpp"
-
-class SuffixTree;
+#include "suffixtree.hpp"
class SuffixDB : public Database {
void generateDB() {}; //adding sequences generates the db
void addSequence(Sequence);
vector<int> findClosestSequences(Sequence*, int);
-
- #ifdef USE_MPI
- int MPISend(int); //just sends numSeqs
- int MPIRecv(int);
- #endif
private:
vector<SuffixTree> suffixForest;