SuffixDB::SuffixDB(string fastaFileName) : Database(fastaFileName) {
suffixForest.resize(numSeqs);
- cout << "Generating the suffix tree database...\t"; cout.flush();
+ mothurOut("Generating the suffix tree database...\t"); cout.flush();
for(int i=0;i<numSeqs;i++){ // The parent class' constructor generates the vector of
suffixForest[i].loadSequence(templateSequences[i]); // template Sequence objects. Here each of these objects
} // is used to generate a suffix tree, aka the suffix forest
- cout << "DONE." << endl << endl; cout.flush();
+ mothurOut("DONE."); mothurOutEndLine(); mothurOutEndLine(); cout.flush();
}