suffixForest.resize(numSeqs);
count = 0;
}
+/**************************************************************************************************/
+
+SuffixDB::SuffixDB() : Database() {
+ count = 0;
+}
+
/**************************************************************************************************/
//assumes sequences have been added using addSequence
vector<int> SuffixDB::findClosestSequences(Sequence* candidateSeq, int num){
return topMatches;
}
catch(exception& e) {
- errorOut(e, "SuffixDB", "findClosestSequences");
+ m->errorOut(e, "SuffixDB", "findClosestSequences");
exit(1);
}
}
count++;
}
catch(exception& e) {
- errorOut(e, "SuffixDB", "addSequence");
+ m->errorOut(e, "SuffixDB", "addSequence");
exit(1);
}
}