string getCommandName() { return "sub.sample"; }
string getCommandCategory() { return "General"; }
string getHelpString();
-
+ string getCitation() { return "http://www.mothur.org/wiki/Sub.sample"; }
+ string getDescription() { return "get a sampling of sequences from a list, shared, rabund, sabund or fasta file"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }
vector<string> names;
map<string, vector<string> > nameMap;
- int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
int getSubSampleShared();
int getSubSampleList();
int getSubSampleRabund();
int getSubSampleSabund();
int getSubSampleFasta();
- int processShared(vector<SharedRAbundVector*>&, ofstream&);
+ int processShared(vector<SharedRAbundVector*>&);
int processRabund(RAbundVector*&, ofstream&);
int processSabund(SAbundVector*&, ofstream&);
int processList(ListVector*&, ofstream&, set<string>&);