}
-void fastq_match(FILE* fin, FILE* fout,
- sw_t* sw,
- unsigned char* query, int n)
+void fastq_match(FILE* fin, FILE* fout, sw_t* sw)
{
int score;
sw = fastq_alloc_sw(query, query_len);
if (optind >= argc || (argc - optind == 1 && strcmp(argv[optind],"-") == 0)) {
- fastq_match(stdin, stdout, sw, query, query_len);
+ fastq_match(stdin, stdout, sw);
}
else {
for (; optind < argc; optind++) {
continue;
}
- fastq_match(fin, stdout, sw, query, query_len);
+ fastq_match(fin, stdout, sw);
}
}