SamSequence.cpp
SamSequenceDictionary.cpp
internal/BamDeviceFactory_p.cpp
+ internal/BamException_p.cpp
internal/BamFile_p.cpp
internal/BamFtp_p.cpp
internal/BamHeader_p.cpp
internal/BamToolsIndex_p.cpp
internal/BamWriter_p.cpp
internal/BgzfStream_p.cpp
+ internal/ILocalIODevice_p.cpp
+ internal/IRemoteIODevice_p.cpp
internal/SamFormatParser_p.cpp
internal/SamFormatPrinter_p.cpp
internal/SamHeaderValidator_p.cpp
# create main BamTools API shared library
add_library( BamTools SHARED ${BamToolsAPISources} )
-set_target_properties( BamTools PROPERTIES SOVERSION "1.0.2" )
-set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
+set_target_properties( BamTools PROPERTIES
+ SOVERSION "2.0.5"
+ OUTPUT_NAME "bamtools" )
+target_link_libraries( BamTools z )
+install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin" )
# create main BamTools API static library
add_library( BamTools-static STATIC ${BamToolsAPISources} )
-set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
-set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
-
-# link libraries with zlib automatically
-target_link_libraries( BamTools z )
+set_target_properties( BamTools-static PROPERTIES
+ OUTPUT_NAME "bamtools"
+ PREFIX "lib" )
target_link_libraries( BamTools-static z )
-
-# set library install destinations
-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools" )
# export API headers
-include(../ExportHeader.cmake)
-set(ApiIncludeDir "api")
-ExportHeader(APIHeaders api_global.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamAlignment.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamAux.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamConstants.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamIndex.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamMultiReader.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamReader.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamWriter.h ${ApiIncludeDir})
-ExportHeader(APIHeaders IBamIODevice.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamConstants.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamHeader.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamProgram.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamProgramChain.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamReadGroup.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamSequence.h ${ApiIncludeDir})
-ExportHeader(APIHeaders SamSequenceDictionary.h ${ApiIncludeDir})
+include( ../ExportHeader.cmake )
+set( ApiIncludeDir "api" )
+ExportHeader( APIHeaders api_global.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamAlgorithms.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamAlignment.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamAux.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamConstants.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamIndex.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamMultiReader.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamReader.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders BamWriter.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders IBamIODevice.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamConstants.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamHeader.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamProgram.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamProgramChain.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamReadGroup.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamSequence.h ${ApiIncludeDir} )
+ExportHeader( APIHeaders SamSequenceDictionary.h ${ApiIncludeDir} )
+
+set( AlgorithmsIncludeDir "api/algorithms" )
+ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )