-bin_PROGRAMS = fastq-grep
+SUBDIRS = swsse2
+
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match
+
fastq_grep_SOURCES = kseq.h fastq-grep.c
fastq_grep_LDADD = $(PCRE_LIBS) -lz
+fastq_kmers_SOURCES = kseq.h fastq-kmers.c
+fastq_kmers_LDADD = -lz
+
+fastq_match_SOURCES = kseq.h fastq-match.c
+fastq_match_LDADD = swsse2/libswsse2.la -lz
+fastq_match_CFLAGS = -msse2