cleaned up code

[mothur.git] / splitmatrix.h

diff --git a/splitmatrix.h b/splitmatrix.h
index 9467dc1a85b3738d27e21cdfc1ab8bd943314416..b8aa55119c810871988e76ca156b1746bd4eeb4a 100644 (file)
--- a/splitmatrix.h
+++ b/splitmatrix.h
@@ -20,7 +20,7 @@ class SplitMatrix  {
        public:
 
                SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
-               SplitMatrix(string, string, float, string); //fastafile, taxFile, cutoff, method
+               SplitMatrix(string, string, string, float, float, string, int, bool, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, classic, outputDir
                
                ~SplitMatrix();
                int split();
@@ -30,10 +30,11 @@ class SplitMatrix  {
        private:
                MothurOut* m;
 
-               string distFile, namefile, singleton, method, taxFile, fastafile;
+               string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
                vector< map< string, string> > dists;
-               float cutoff;
-               bool large;
+               float cutoff, distCutoff;
+               bool large, classic;
+               int processors;
                                
                int splitDistance();
                int splitClassify();