added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / splitmatrix.h

diff --git a/splitmatrix.h b/splitmatrix.h
index b98bdfb4b56b952d9ca0a2c7a784c22f02671e94..4ff316073789b694916a75fae5d2081a813d96c7 100644 (file)
--- a/splitmatrix.h
+++ b/splitmatrix.h
@@ -20,7 +20,7 @@ class SplitMatrix  {
        public:
 
                SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
-               SplitMatrix(string, string, string, float, string, int); //fastafile, namefile, taxFile, cutoff, method, processors
+               SplitMatrix(string, string, string, float, float, string, int, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, outputDir
                
                ~SplitMatrix();
                int split();
@@ -30,9 +30,9 @@ class SplitMatrix  {
        private:
                MothurOut* m;
 
-               string distFile, namefile, singleton, method, taxFile, fastafile;
+               string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
                vector< map< string, string> > dists;
-               float cutoff;
+               float cutoff, distCutoff;
                bool large;
                int processors;