string getCommandCategory() { return "Sequence Processing"; }
string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Split.group"; }
+ string getDescription() { return "split a name or fasta file by group"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }
private:
- int readNames();
- int splitFasta();
-
vector<string> outputNames;
- map<string, vector<string> > nameMap;
- map<string, vector<string> >::iterator itNames;
- GroupMap* groupMap;
-
+
string outputDir, namefile, groupfile, groups, fastafile;
vector<string> Groups;
bool abort;