paralellized seq.error and dist.shared added some error checks to libshuff and dist...

[mothur.git] / splitgroupscommand.cpp

diff --git a/splitgroupscommand.cpp b/splitgroupscommand.cpp
index bdb6e7c0151b10cb96fc6d0aa59d66199dba2e6f..220c7cc680b1729880001c5bf94ad1fc284a85e9 100644 (file)
--- a/splitgroupscommand.cpp
+++ b/splitgroupscommand.cpp
@@ -41,7 +41,7 @@ string SplitGroupCommand::getHelpString(){
                helpString += "If you want .fasta and .names files for all groups, set groups=all.  \n";
                helpString += "The split.group command should be used in the following format: split.group(fasta=yourFasta, group=yourGroupFile).\n";
                helpString += "Example: split.group(fasta=abrecovery.fasta, group=abrecovery.groups).\n";
-               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -70,6 +70,7 @@ SplitGroupCommand::SplitGroupCommand(string option)  {
                        
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();