Attempt to collect literature on and around NeuroDebian

[neurodebian.git] / sphinx / whoisusingit.rst

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+.. -*- mode: rst; fill-column: 78; indent-tabs-mode: nil -*-
+.. vi: set ft=rst sts=4 ts=4 sw=4 et tw=79:
+  ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ###
+  #
+  #   See COPYING file distributed along with the NeuroDebian package for the
+  #   copyright and license terms.
+  #
+  ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ###
+
+
+.. index:: Who is using it?, Publications
+.. _chap_whoisusingit:
+
+****************
+Who Is Using It?
+****************
+
+
+.. only:: html
+
+  If you are using NeuroDebian or have published a study employing it, please
+  leave a comment at the bottom of this page, if you want to be listed here as
+  well.
+
+
+Tools and systems built atop NeuroDebian
+========================================
+
+* ref:`Nemoto et al., BMC Medical Imaging (2011) <NDR+2011>`: Lin4Neuro: a
+  customized Linux distribution ready for neuroimaging analysis.
+
+* ref:`Stoner et al., Frontiers in Neuroinformatics (2012) <SLZ+2011>`:
+  A cloud-based data-sharing and analysis cyberinfrastructure for
+  neuroinformatics.
+
+Articles referring to NeuroDebian
+=================================
+
+* :ref:`Yamazaki et al., NeuralNetworks (2011) <YIO+2012>`: Simulation platform:
+  A cloud-based online simulation environment.
+
+* ref:`Aguirre, NeuroImage (2012) <Agu2012>`: FIASCO, VoxBo, and MEDx: Behind
+  the code.
+
+* ref:`Mathôt et al., Behavioral Research Methods (2012) <MST2012>`: OpenSesame:
+  An open-source, graphical experiment builder for the social sciences.
+
+* ref:`Minervini et al., Image Processing Theory, Tools and Applications (2012)
+  <MDT+2012>`: Mouse neuroimaging phenotyping in the cloud.
+
+* ref:`Galluppi et al., Computing Frontiers (2012) <GDS+2012>`: A hierachical
+  configuration system for a massively parallel neural hardware platform.
+
+* ref:`Cauda et al., NeuroImage (2012) <CCT+2012>`: Meta-analytic clustering of
+  the insular cortex Characterizing the meta-analytic connectivity of the insula
+  when involved in active tasks.
+
+* ref:`Gingnell et al., Psychoneuroendocrinology (2012) <GEF+2012>`: Oral
+  contraceptive use changes brain activity and mood in women with previous
+  negative affect on the pill—A double-blinded, placebo-controlled randomized
+  trial of a levonorgestrel-containing combined oral contraceptive.
+
+* ref:`Gingnell et al., Hormones and Behavior (2012) <GMB+2012>`: Menstrual
+  cycle effects on amygdala reactivity to emotional stimulation in premenstrual
+  dysphoric disorder.
+
+* ref:`Milham, Neuron, (2012) <Mil2012>`: Open Neuroscience Solutions for the
+  Connectome-wide Association Era.
+
+* ref:`Visan, Computer Science Dissertations (2012) <Vis2012>`: Temporal
+  meta-programming: treating time as a spatial dimension.
+
+* ref:`Gerhard et al., Frontiers in Neuroinformatics (2011) <GDL+2011>`: The
+  connectome viewer toolkit: an open source framework to manage, analyze, and
+  visualize connectomes.
+
+* ref:`Soh et al., Journal of Integrative Bioinformatics (2011) <SMT+2011>`:
+  Integrative visualization of temporally varying medical image patterns.
+
+* ref:`Gosh et al., HBM (2010) <GBC+2010>`: Nipype: opensource platform for
+  unified and replicable interaction with existing neuroimaging tools.
+