vector<string> setParameters();
string getCommandName() { return "sort.seqs"; }
string getCommandCategory() { return "Sequence Processing"; }
- string getHelpString();
+ string getOutputFileNameTag(string, string);
+ string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Sort.seqs"; }
string getDescription() { return "puts sequences from a fasta, name, group, quality, flow or taxonomy file in the same order"; }
int readFlow();
int readName();
int readGroup();
- int readAccnos();
int readTax();
int readQual();