private:
map<string, int> names;
- string accnosfile, fastafile, namefile, groupfile, taxfile, qualfile, flowfile, outputDir;
+ string accnosfile, fastafile, namefile, groupfile, countfile, taxfile, qualfile, flowfile, outputDir;
bool abort, large;
vector<string> outputNames;
int readName();
int readGroup();
int readTax();
+ int readCount();
int readQual();
};