moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / soergel.cpp

diff --git a/soergel.cpp b/soergel.cpp
deleted file mode 100644 (file)
index b2fdf84..0000000
--- a/soergel.cpp
+++ /dev/null
@@ -1,42 +0,0 @@
-/*
- *  soergel.cpp
- *  Mothur
- *
- *  Created by westcott on 12/15/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "soergel.h"
-
-/***********************************************************************/
-EstOutput Soergel::getValues(vector<SharedRAbundVector*> shared) {
-       try {
-               data.resize(1,0);
-               
-               double sumNum = 0.0;
-               double sumMax = 0.0;
-               
-               //calc the 2 denominators
-               for (int i = 0; i < shared[0]->getNumBins(); i++) { 
-                       
-                       int Aij = shared[0]->getAbundance(i);
-                       int Bij = shared[1]->getAbundance(i);
-                       
-                       sumNum += abs((Aij - Bij));
-                       sumMax += max(Aij, Bij);
-               }
-               
-               data[0] = sumNum / sumMax;
-               
-               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "Soergel", "getValues");
-               exit(1);
-       }
-}
-/***********************************************************************/
-