vector<data_struct> all; all.clear();
myQuery = *query;
+
for (int i = 0; i < refSeqs.size(); i++) {
for (int j = i+1; j < refSeqs.size(); j++) {
float QRA = computePercentID(query, parentA, breakpoint+1, length);
float LAB = computePercentID(parentA, parentB, 0, breakpoint);
- float RAB = computePercentID(parentA, parentB, breakpoint+1, length);
-
+ float RAB = computePercentID(parentA, parentB, breakpoint+1, length);
+
float AB = ((LAB*leftLength) + (RAB*rightLength)) / (float) length;
float QA = ((QLA*leftLength) + (QRA*rightLength)) / (float) length;
float QB = ((QLB*leftLength) + (QRB*rightLength)) / (float) length;
float divR_QLA_QRB = min((QLA_QRB/QA), (QLA_QRB/QB));
float divR_QLB_QRA = min((QLB_QRA/QA), (QLB_QRA/QB));
+
//cout << q->getName() << '\t';
//cout << pA->getName() << '\t';
//cout << pB->getName() << '\t';
}//if
}//for
+
return data;
}