added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / shhhercommand.h

diff --git a/shhhercommand.h b/shhhercommand.h
index 00bd41abef486338da1d33463b0698bd895266a1..b3a0071079bdbcbdb6a1069cf6bc1d2f53f8fad9 100644 (file)
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -31,11 +31,11 @@ public:
        ~ShhherCommand() {}
        
        vector<string> setParameters();
-       string getCommandName()                 { return "shhh.seqs";   }
-       string getCommandCategory()             { return "Hidden";              }
+       string getCommandName()                 { return "shhh.flows";  }
+       string getCommandCategory()             { return "Sequence Processing";         }
        string getHelpString(); 
-       string getCitation() { return "no citation"; }
-       string getDescription()         { return "shhh.seqs"; }
+       string getCitation() { return "http://www.mothur.org/wiki/Shhh.flows"; }
+       string getDescription()         { return "shhh.flows"; }
 
        
        int execute(); 
@@ -129,7 +129,7 @@ private:
 //custom data structure for threads to use.
 // This is passed by void pointer so it can be any data type
 // that can be passed using a single void pointer (LPVOID).
-typedef struct flowDistParentForkData {
+struct flowDistParentForkData {
        string distFileName; 
        vector<int> mapUniqueToSeq;
        vector<int> mapSeqToUnique;