*** empty log message ***

[mothur.git] / shhhercommand.h

diff --git a/shhhercommand.h b/shhhercommand.h
index b26341ebe4c83dc0024f313640a06bf62f045638..9e50824b05f9c70a151a903b8119ba09c447b963 100644 (file)
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -33,7 +33,8 @@ private:
        int abort;
        map<string, vector<string> > outputTypes;
        
-       string outputDir, flowFileName, flowFilesFileName, lookupFileName;
+       string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName;
+
        int processors, maxIters;
        float cutoff, sigma, minDelta;
        
@@ -70,7 +71,7 @@ private:
        void getJointLookUp();
        void getFlowData();
        void getUniques();
-       float getProbIntensity(int);
+       double getProbIntensity(int);
        float calcPairwiseDist(int, int);
        void flowDistParentFork(string, int, int);
        
@@ -110,4 +111,5 @@ private:
 };
 
 
-#endif
\ No newline at end of file
+#endif
+