flowFileName = validParameter.validFile(parameters, "flow", true);
flowFilesFileName = validParameter.validFile(parameters, "file", true);
if (flowFileName == "not found" && flowFilesFileName == "not found") {
- m->mothurOut("values for either flow or file must be provided for the shhh.seqs command.");
+ m->mothurOut("values for either flow or file must be provided for the shhh.flows command.");
m->mothurOutEndLine();
abort = true;
}
if (m->control_pressed) { break; }
+
+
getOTUData(listFileName);
m->mothurRemove(distFileName);
if (m->control_pressed) { break; }
+
for(int i=1;i<ncpus;i++){
MPI_Send(&numOTUs, 1, MPI_INT, i, tag, MPI_COMM_WORLD);
MPI_Send(&singleLookUp[0], singleLookUp.size(), MPI_DOUBLE, i, tag, MPI_COMM_WORLD);
NameAssignment* clusterNameMap = new NameAssignment(namesFileName);
clusterNameMap->readMap();
read->read(clusterNameMap);
-
+
ListVector* list = read->getListVector();
SparseMatrix* matrix = read->getMatrix();