RAbundVector* rabund = new RAbundVector(list->getRAbundVector());
- Cluster* cluster = new CompleteLinkage(rabund, list, matrix, cutoff, "furthest");
+ float adjust = -1.0;
+ Cluster* cluster = new CompleteLinkage(rabund, list, matrix, cutoff, "furthest", adjust);
string tag = cluster->getTag();
double clusterCutoff = cutoff;
//loop through and create all the processes you want
while (process != processors) {
- int pid = fork();
+ pid_t pid = fork();
if (pid > 0) {
processIDS.push_back(pid); //create map from line number to pid so you can append files in correct order later
process++;
}else if (pid == 0){
- num = driver(dividedFiles[process], compositeFASTAFileName + toString(getpid()) + ".temp", compositeNamesFileName + toString(getpid()) + ".temp");
+ num = driver(dividedFiles[process], compositeFASTAFileName + m->mothurGetpid(process) + ".temp", compositeNamesFileName + m->mothurGetpid(process) + ".temp");
//pass numSeqs to parent
ofstream out;
- string tempFile = compositeFASTAFileName + toString(getpid()) + ".num.temp";
+ string tempFile = compositeFASTAFileName + m->mothurGetpid(process) + ".num.temp";
m->openOutputFile(tempFile, out);
out << num << endl;
out.close();