added get.repseqs command, started matrix output command

[mothur.git] / sharedutilities.h

diff --git a/sharedutilities.h b/sharedutilities.h
index d43d2b6982d95ef36e5c5814b6d3f4767f3a717e..75ecf232bf422d062b5ac8d06560e6ed4448612f 100644 (file)
--- a/sharedutilities.h
+++ b/sharedutilities.h
@@ -23,14 +23,16 @@ class SharedUtil {
                
                void getSharedVectors(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
                void getSharedVectorswithReplacement(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
+               void setGroups(vector<string>&, vector<string>&);  //globaldata->Groups, your tree or group map
                void setGroups(vector<string>&, vector<string>&, string);  //globaldata->Groups, your tree or group map, mode
                void setGroups(vector<string>&, vector<string>&, string&, int&, string);  //globaldata->Groups, your tree or group map, allgroups, numGroups, mode
                void getCombos(vector<string>&, vector<string>, int&); //groupcomb, globaldata->Groups, numcomb
                void updateGroupIndex(vector<string>&, map<string, int>&); //globaldata->Groups, groupmap->groupIndex
+               bool isValidGroup(string, vector<string>);
                
        private:
        
-               bool isValidGroup(string, vector<string>);
+               
 };
 
 /**************************************************************************************************/