mods to shhh.seqs and trim.flows to fix eye candy output

[mothur.git] / sharedutilities.cpp

diff --git a/sharedutilities.cpp b/sharedutilities.cpp
index 6dffee95e1c9a2e17bbda649424d0cb53402e513..f43bb8107f3ec05ef462bcbb491283706c6a9730 100644 (file)
--- a/sharedutilities.cpp
+++ b/sharedutilities.cpp
@@ -275,9 +275,13 @@ void SharedUtil::getCombos(vector<string>& groupComb, vector<string> userGroups,
                numComp = 0;
                for (int i=0; i< userGroups.size(); i++) { 
                        numComp += i; 
-                       for (int l = i+1; l < userGroups.size(); l++) {
-                               //set group comparison labels
-                               groupComb.push_back(userGroups[i] + "-" + userGroups[l]);
+                       for (int l = 0; l < i; l++) {
+                               if (userGroups[i] > userGroups[l]) {
+                                       //set group comparison labels
+                                       groupComb.push_back(userGroups[l] + "-" + userGroups[i]);
+                               }else{
+                                       groupComb.push_back(userGroups[i] + "-" + userGroups[l]);
+                               }
                        }
                } 
        }
@@ -314,3 +318,6 @@ void SharedUtil::updateGroupIndex(vector<string>& userGroups, map<string, int>&
                exit(1);
        }
 }
+/**************************************************************************************/
+
+