#include "sharedthetan.h"
/***********************************************************************/
-EstOutput SharedThetaN::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+EstOutput ThetaN::getValues(vector<SharedRAbundVector*> shared) {
try {
data.resize(1,0);
numerator = 0.0; denominator = 0.0; thetaN = 0.0; sumSharedA = 0.0; sumSharedB = 0.0; a = 0.0; b = 0.0; d = 0.0;
//get the total values we need to calculate the theta denominator sums
- for (int i = 0; i < shared1->size(); i++) {
+ for (int i = 0; i < shared[0]->size(); i++) {
//store in temps to avoid multiple repetitive function calls
- Atotal += shared1->getAbundance(i);
- Btotal += shared2->getAbundance(i);
+ Atotal += shared[0]->getAbundance(i);
+ Btotal += shared[1]->getAbundance(i);
}
//calculate the theta denominator sums
- for (int j = 0; j < shared1->size(); j++) {
+ for (int j = 0; j < shared[0]->size(); j++) {
//store in temps to avoid multiple repetitive function calls
- tempA = shared1->getAbundance(j);
- tempB = shared2->getAbundance(j);
+ tempA = shared[0]->getAbundance(j);
+ tempB = shared[1]->getAbundance(j);
//they are shared
if ((tempA != 0) && (tempB != 0)) {
return data;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the SharedThetaN class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "ThetaN", "getValues");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the SharedThetaN class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}
+
/***********************************************************************/