added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / sharedthetan.cpp

diff --git a/sharedthetan.cpp b/sharedthetan.cpp
index d118be94baca17e01f9cc11ce2e437f2955c4063..7c42a18d662f9b8d976a39515a47c4e79d509e22 100644 (file)
--- a/sharedthetan.cpp
+++ b/sharedthetan.cpp
@@ -14,9 +14,9 @@ EstOutput ThetaN::getValues(vector<SharedRAbundVector*> shared) {
        try {   
                data.resize(1,0);
                
-               int Atotal, Btotal, tempA, tempB;
+               double Atotal, Btotal, tempA, tempB;
                Atotal = 0; Btotal = 0; 
-               float numerator, denominator, thetaN, sumSharedA, sumSharedB, a, b, d;
+               double numerator, denominator, thetaN, sumSharedA, sumSharedB, a, b, d;
                numerator = 0.0; denominator = 0.0; thetaN = 0.0; sumSharedA = 0.0; sumSharedB = 0.0; a = 0.0; b = 0.0; d = 0.0;
                
                //get the total values we need to calculate the theta denominator sums
@@ -46,7 +46,7 @@ EstOutput ThetaN::getValues(vector<SharedRAbundVector*> shared) {
                
                if (isnan(thetaN) || isinf(thetaN)) { thetaN = 0; }
                
-               data[0] = thetaN;
+               data[0] = 1.0 - thetaN;
                
                return data;
        }