numerator = 0.0; denominator = 0.0; thetaN = 0.0; sumSharedA = 0.0; sumSharedB = 0.0; a = 0.0; b = 0.0; d = 0.0;
//get the total values we need to calculate the theta denominator sums
- for (int i = 0; i < shared[0]->size(); i++) {
+ for (int i = 0; i < shared[0]->getNumBins(); i++) {
//store in temps to avoid multiple repetitive function calls
Atotal += shared[0]->getAbundance(i);
Btotal += shared[1]->getAbundance(i);
}
//calculate the theta denominator sums
- for (int j = 0; j < shared[0]->size(); j++) {
+ for (int j = 0; j < shared[0]->getNumBins(); j++) {
//store in temps to avoid multiple repetitive function calls
tempA = shared[0]->getAbundance(j);
tempB = shared[1]->getAbundance(j);
if (isnan(thetaN) || isinf(thetaN)) { thetaN = 0; }
- data[0] = thetaN;
+ data[0] = 1.0 - thetaN;
return data;
}