fixed some bugs

[mothur.git] / sharedsorabund.cpp

diff --git a/sharedsorabund.cpp b/sharedsorabund.cpp
index e8953819decf34c6f90efec99da646a7ca38af33..6748bfe86af75f13a5c206577ed5a7f0d51fa6ae 100644 (file)
--- a/sharedsorabund.cpp
+++ b/sharedsorabund.cpp
@@ -11,13 +11,13 @@
 
 /***********************************************************************/
 
-EstOutput SharedSorAbund::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+EstOutput SorAbund::getValues(vector<SharedRAbundVector*> shared) {
        try {
                EstOutput UVest;
                UVest.resize(2,0);
                data.resize(1,0);
                
-               UVest = uv->getUVest(shared1, shared2);
+               UVest = uv->getUVest(shared);
                
                //UVest[0] is Uest, UVest[1] is Vest
                data[0] = (2 * UVest[0] * UVest[1]) / ((float)(UVest[0] + UVest[1]));
@@ -27,11 +27,11 @@ EstOutput SharedSorAbund::getValues(SharedRAbundVector* shared1, SharedRAbundVec
                return data;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the SharedSorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               cout << "Standard Error: " << e.what() << " has occurred in the SorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
                exit(1);
        }
        catch(...) {
-               cout << "An unknown error has occurred in the SharedSorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               cout << "An unknown error has occurred in the SorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
                exit(1);
        }       
 }