SharedRAbundFloatVector::SharedRAbundFloatVector(ifstream& f) : DataVector(), maxRank(0.0), numBins(0), numSeqs(0.0) {
try {
- m->namesOfGroups.clear();
+ m->clearAllGroups();
+ vector<string> allGroups;
int num, count;
float inputData;
lookup[0]->setLabel(label);
lookup[0]->setGroup(groupN);
- m->namesOfGroups.push_back(groupN);
+ allGroups.push_back(groupN);
//fill vector. data = first sharedrabund in file
for(int i=0;i<num;i++){
f >> groupN >> num;
count++;
- m->namesOfGroups.push_back(groupN);
+ allGroups.push_back(groupN);
//add new vector to lookup
temp = new SharedRAbundFloatVector();
}
m->saveNextLabel = nextLabel;
+ m->setAllGroups(allGroups);
}
catch(exception& e) {
/***********************************************************************/
void SharedRAbundFloatVector::printHeaders(ostream& output){
try {
+ string snumBins = toString(numBins);
output << "label\tGroup\tnumOtus\t";
if (m->sharedHeaderMode == "tax") {
for (int i = 0; i < numBins; i++) {
//if there is a bin label use it otherwise make one
- string binLabel = "PhyloType" + toString(i+1);
+ string binLabel = "PhyloType";
+ string sbinNumber = toString(i+1);
+ if (sbinNumber.length() < snumBins.length()) {
+ int diff = snumBins.length() - sbinNumber.length();
+ for (int h = 0; h < diff; h++) { binLabel += "0"; }
+ }
+ binLabel += sbinNumber;
if (i < m->currentBinLabels.size()) { binLabel = m->currentBinLabels[i]; }
output << binLabel << '\t';
}else {
for (int i = 0; i < numBins; i++) {
//if there is a bin label use it otherwise make one
- string binLabel = "Otu" + toString(i+1);
+ string binLabel = "Otu";
+ string sbinNumber = toString(i+1);
+ if (sbinNumber.length() < snumBins.length()) {
+ int diff = snumBins.length() - sbinNumber.length();
+ for (int h = 0; h < diff; h++) { binLabel += "0"; }
+ }
+ binLabel += sbinNumber;
if (i < m->currentBinLabels.size()) { binLabel = m->currentBinLabels[i]; }
output << binLabel << '\t';
SharedUtil* util;
util = new SharedUtil();
- util->setGroups(m->Groups, m->namesOfGroups);
+ vector<string> Groups = m->getGroups();
+ vector<string> allGroups = m->getAllGroups();
+ util->setGroups(Groups, allGroups);
+ m->setGroups(Groups);
bool remove = false;
for (int i = 0; i < lookup.size(); i++) {
//if this sharedrabund is not from a group the user wants then delete it.
- if (util->isValidGroup(lookup[i]->getGroup(), m->Groups) == false) {
+ if (util->isValidGroup(lookup[i]->getGroup(), m->getGroups()) == false) {
delete lookup[i]; lookup[i] = NULL;
lookup.erase(lookup.begin()+i);
i--;
//for each bin
vector<string> newBinLabels;
+ string snumBins = toString(thislookup[0]->getNumBins());
for (int i = 0; i < thislookup[0]->getNumBins(); i++) {
if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; }
newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup());
}
//if there is a bin label use it otherwise make one
- string binLabel = "Otu" + toString(i+1);
+ string binLabel = "Otu";
+ string sbinNumber = toString(i+1);
+ if (sbinNumber.length() < snumBins.length()) {
+ int diff = snumBins.length() - sbinNumber.length();
+ for (int h = 0; h < diff; h++) { binLabel += "0"; }
+ }
+ binLabel += sbinNumber;
if (i < m->currentBinLabels.size()) { binLabel = m->currentBinLabels[i]; }
newBinLabels.push_back(binLabel);