SharedOrderVector::SharedOrderVector(ifstream& f) : DataVector() { //reads in a shared file
try {
- globaldata = GlobalData::getInstance();
maxRank = 0; numBins = 0; numSeqs = 0;
-
- if (globaldata->gGroupmap == NULL) { groupmap = new GroupMap(); }
+
+ groupmap = new GroupMap();
int num, inputData, count;
count = 0; numSeqs = 0;
f >> label >> groupN >> num;
holdLabel = label;
- if (globaldata->gGroupmap == NULL) {
- //save group in groupmap
- groupmap->namesOfGroups.push_back(groupN);
- groupmap->groupIndex[groupN] = 0;
- }
+
+ //save group in groupmap
+ groupmap->namesOfGroups.push_back(groupN);
+ groupmap->groupIndex[groupN] = 0;
+
for(int i=0;i<num;i++){
f >> inputData;
f >> groupN >> num;
count++;
- if (globaldata->gGroupmap == NULL) {
- //save group in groupmap
- groupmap->namesOfGroups.push_back(groupN);
- groupmap->groupIndex[groupN] = count;
- }
+
+ //save group in groupmap
+ groupmap->namesOfGroups.push_back(groupN);
+ groupmap->groupIndex[groupN] = count;
+
for(int i=0;i<num;i++){
f >> inputData;
//put file pointer back since you are now at a new distance label
for (int i = 0; i < nextLabel.length(); i++) { f.unget(); }
- if (globaldata->gGroupmap == NULL) { globaldata->gGroupmap = groupmap; }
+ m->namesOfGroups = groupmap->namesOfGroups;
updateStats();
}
}
+/***********************************************************************/
+void SharedOrderVector::clear(){
+ numBins = 0;
+ maxRank = 0;
+ numSeqs = 0;
+ data.clear();
+}
/***********************************************************************/
void SharedOrderVector::resize(int){
util = new SharedUtil();
vector<SharedRAbundVector*> lookup;
- util->setGroups(globaldata->Groups, globaldata->gGroupmap->namesOfGroups);
- util->getSharedVectors(globaldata->Groups, lookup, this);
+ util->setGroups(m->Groups, m->namesOfGroups);
+ util->getSharedVectors(m->Groups, lookup, this);
return lookup;
}