#include "sharedmorisitahorn.h"
/***********************************************************************/
-EstOutput MorHorn::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+EstOutput MorHorn::getValues(vector<SharedRAbundVector*> shared) {
try {
data.resize(1,0);
morhorn = 0.0; sumSharedA = 0.0; sumSharedB = 0.0; a = 0.0; b = 0.0; d = 0.0;
//get the total values we need to calculate the theta denominator sums
- for (int i = 0; i < shared1->size(); i++) {
+ for (int i = 0; i < shared[0]->size(); i++) {
//store in temps to avoid multiple repetitive function calls
- Atotal += shared1->getAbundance(i);
- Btotal += shared2->getAbundance(i);
+ Atotal += shared[0]->getAbundance(i);
+ Btotal += shared[1]->getAbundance(i);
}
//calculate the theta denominator sums
- for (int j = 0; j < shared1->size(); j++) {
+ for (int j = 0; j < shared[0]->size(); j++) {
//store in temps to avoid multiple repetitive function calls
- tempA = shared1->getAbundance(j);
- tempB = shared2->getAbundance(j);
+ tempA = shared[0]->getAbundance(j);
+ tempB = shared[1]->getAbundance(j);
a += tempA * tempA;
b += tempB * tempB;