try {
data.resize(1,0);
- int Atotal, Btotal, tempA, tempB;
+ double Atotal, Btotal, tempA, tempB;
Atotal = 0; Btotal = 0;
- float morhorn, sumSharedA, sumSharedB, a, b, d;
+ double morhorn, sumSharedA, sumSharedB, a, b, d;
morhorn = 0.0; sumSharedA = 0.0; sumSharedB = 0.0; a = 0.0; b = 0.0; d = 0.0;
//get the total values we need to calculate the theta denominator sums
Btotal += shared[1]->getAbundance(i);
}
- //calculate the theta denominator sums
+ //calculate the denominator sums
for (int j = 0; j < shared[0]->size(); j++) {
//store in temps to avoid multiple repetitive function calls
tempA = shared[0]->getAbundance(j);
tempB = shared[1]->getAbundance(j);
+ float relA = tempA / Atotal;
+ float relB = tempB / Btotal;
- a += tempA * tempA;
- b += tempB * tempB;
- d += tempA * tempB;
+ a += relA * relA;
+ b += relB * relB;
+ d += relA * relB;
}
- a /= double(Atotal * Atotal);
- b /= double(Btotal * Btotal);
- d /= double(Atotal * Btotal);
-
morhorn = (2 * d) / (a + b);
-
+
if (isnan(morhorn) || isinf(morhorn)) { morhorn = 0; }
data[0] = morhorn;
return data;
}
catch(exception& e) {
- errorOut(e, "MorHorn", "getValues");
+ m->errorOut(e, "MorHorn", "getValues");
exit(1);
}
}