*chaoS1Sabund = shared[0]->getSAbundVector();
*chaoS2Sabund = shared[1]->getSAbundVector();
+
+ //chaoS1Sabund->print(cout);
+ //chaoS2Sabund->print(cout);
S12 = sharedChao->getValues(shared);
S1 = chaoS1->getValues(chaoS1Sabund);
S2 = chaoS2->getValues(chaoS2Sabund);
-
- data[0] = S12[0] / (float)(S1[0] + S2[0] - S12[0]);
+
+ //cout << S12[0] << '\t' << S1[0] << '\t' << S2[0] << endl;
+
+ data[0] = 1.0 - S12[0] / (float)(S1[0] + S2[0] - S12[0]);
+ //cout << data[0] << endl;
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-
+
+ delete sharedChao;
+ delete chaoS1;
+ delete chaoS2;
+ delete chaoS1Sabund;
+ delete chaoS2Sabund;
+
return data;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the Jest class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "Jest", "getValues");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the Jest class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}
/***********************************************************************/