fixing minor bugs

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index b3b3e6f5d0381d2354d8113012b13251cdbec7e7..e5be50a8b9f80488449db640e65721d32f395a5d 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -9,14 +9,11 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <map>
 #include "command.hpp"
 #include "sharedlistvector.h"
 #include "inputdata.h"
 #include "shared.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 
 /* The shared() command:
        The shared command can only be executed after a successful read.shared command.  
@@ -33,15 +30,17 @@ public:
        SharedCommand();        
        ~SharedCommand();
        int execute();  
+       void help() {}
        
 private:
        void printSharedData();
        GlobalData* globaldata;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        SharedListVector* SharedList;
        InputData* input;
        Shared* shared;
        map<string, SharedRAbundVector*>::iterator it;
+       //vector<SharedRAbundVector*> lookup;
        ofstream out;
        string filename;