added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index add6ee8d4a6ebdfd86d6a08d750c7fe88cc3bd35..861632ce7d6a8026c14b463387b9d8dbb320522d 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -32,7 +32,8 @@ public:
        string getCommandCategory()             { return "OTU-Based Approaches";        }
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Make.shared"; }
-       
+       string getDescription()         { return "make a shared file from a list and group file"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
        
@@ -42,6 +43,7 @@ private:
        int readOrderFile();
        bool isValidGroup(string, vector<string>);
        int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+       int ListGroupSameSeqs();
        
        SharedListVector* SharedList;
        InputData* input;