added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index f1e7c48cd71ee7ff1984e43cb7bb5676a3ee42a5..861632ce7d6a8026c14b463387b9d8dbb320522d 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -31,7 +31,9 @@ public:
        string getCommandName()                 { return "make.shared";                         }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
        string getHelpString(); 
-       
+       string getCitation() { return "http://www.mothur.org/wiki/Make.shared"; }
+       string getDescription()         { return "make a shared file from a list and group file"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
        
@@ -41,6 +43,7 @@ private:
        int readOrderFile();
        bool isValidGroup(string, vector<string>);
        int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+       int ListGroupSameSeqs();
        
        SharedListVector* SharedList;
        InputData* input;