private:
void printSharedData(vector<SharedRAbundVector*>);
- void createMisMatchFile();
+ int createMisMatchFile();
bool isValidGroup(string, vector<string>);
- void eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+ int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
GlobalData* globaldata;
ReadOTUFile* read;
SharedListVector* SharedList;
InputData* input;
GroupMap* groupMap;
- vector<string> groups;
+ vector<string> groups, outputNames;
ofstream out;
string filename, fileroot, outputDir;
bool firsttime, pickedGroups;