modified read.otu and shared command

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index e5be50a8b9f80488449db640e65721d32f395a5d..3467c7b1d9e6beb1bcd2b5af9a63f9d9bbaf8045 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -12,7 +12,6 @@
 #include "command.hpp"
 #include "sharedlistvector.h"
 #include "inputdata.h"
-#include "shared.h"
 #include "readotu.h"
 
 /* The shared() command:
@@ -33,16 +32,17 @@ public:
        void help() {}
        
 private:
-       void printSharedData();
+       void printSharedData(vector<SharedRAbundVector*>);
        GlobalData* globaldata;
        ReadOTUFile* read;
        SharedListVector* SharedList;
        InputData* input;
-       Shared* shared;
-       map<string, SharedRAbundVector*>::iterator it;
-       //vector<SharedRAbundVector*> lookup;
+       GroupMap* groupMap;
        ofstream out;
-       string filename;
+       string filename, fileroot;
+       bool firsttime;
+       map<string, ofstream*> filehandles;
+       map<string, ofstream*>::iterator it3;
 
 };