public:
SharedCommand(string);
+ SharedCommand();
~SharedCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help() {}
int readOrderFile();
bool isValidGroup(string, vector<string>);
int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+ map<string, vector<string> > outputTypes;
GlobalData* globaldata;
ReadOTUFile* read;