private:
void printSharedData(vector<SharedRAbundVector*>);
int createMisMatchFile();
+ int readOrderFile();
bool isValidGroup(string, vector<string>);
int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
SharedListVector* SharedList;
InputData* input;
GroupMap* groupMap;
- vector<string> groups, outputNames;
+ vector<string> groups, outputNames, order;
ofstream out;
string filename, fileroot, outputDir;
bool firsttime, pickedGroups;