fixed bug in sharedcommand and parselistcommand and changed file extension of sorenso...

[mothur.git] / sharedcommand.cpp

diff --git a/sharedcommand.cpp b/sharedcommand.cpp
index 6c4c8ac9afbda821c545ab3a48d60a993e290620..0cc1e22f2d9067fb7fcad21b6cff5c456f5e7049 100644 (file)
--- a/sharedcommand.cpp
+++ b/sharedcommand.cpp
@@ -41,13 +41,13 @@ int SharedCommand::execute(){
                read = new ReadPhilFile(globaldata->inputFileName);     
                read->read(&*globaldata); 
                input = globaldata->ginput;
-               list = globaldata->glist;
+               SharedList = globaldata->gSharedList;
                
                shared = new Shared();
                int i = 0;
-               while(list != NULL){
-                       shared->getSharedVectors(i, list); //fills sharedGroups with new info and updates sharedVector
-                       list = input->getListVector(); //get new list vector to process
+               while(SharedList != NULL){
+                       shared->getSharedVectors(i, SharedList); //fills sharedGroups with new info and updates sharedVector
+                       SharedList = input->getSharedListVector(); //get new list vector to process
                        printSharedData(); //prints info to the .shared file
                        i++;
                }