using namespace std;
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
-#include <iomanip>
-#include <vector>
-#include <string>
-#include <sstream>
-#include <map>
+#include "mothur.h"
#include "sharedrabundvector.h"
-#include "listvector.hpp"
+#include "sharedlistvector.h"
#include "globaldata.hpp"
class Shared {
public:
Shared();
- ~Shared();
- void getSharedVectors(int, ListVector*);
+ ~Shared() {};
+ void getSharedVectors(SharedListVector*);
map<string, SharedRAbundVector*> sharedGroups; //string is groupname, SharedVector* is out info for that group
private:
GlobalData* globaldata;
- void parse(int, ListVector*);
+ void parse(int, SharedListVector*);
vector< map<string, SharedRAbundVector*> > sharedRAbund; //contains all the info needed to create the .shared file not sure if we will need
};
-#endif
\ No newline at end of file
+#endif