public:
SffInfoCommand(string);
+ SffInfoCommand();
~SffInfoCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
vector<string> filenames, outputNames, accnosFileNames;
bool abort, fasta, qual, trim, flow, sfftxt, hasAccnos;
set<string> seqNames;
+ map<string, vector<string> > outputTypes;
int extractSffInfo(string, string);
int readCommonHeader(ifstream&, CommonHeader&);