fixed bug with trim.seqs allfiles=t

[mothur.git] / setcurrentcommand.h

diff --git a/setcurrentcommand.h b/setcurrentcommand.h
index 5a40e4a20f97377e86d973c2412cc17e12e3fcb0..e942e60b436acbd5ad9a014ddc8176c899e14806 100644 (file)
--- a/setcurrentcommand.h
+++ b/setcurrentcommand.h
@@ -24,6 +24,7 @@ public:
        string getCommandName()                 { return "set.current"; }
        string getCommandCategory()             { return "General";             }
        string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Set.current"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
@@ -37,7 +38,7 @@ private:
        vector<string> types;
        
        string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile;
-       string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile;
+       string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile;
 
        
 };