string first, second;
int countName = 0;
set<string> thisnames1;
+
while(!inName.eof()) {
if (m->control_pressed) { break; }
if (countName != (groupMap->getNumSeqs())) {
vector<string> groupseqsnames = groupMap->getNamesSeqs();
+
for (int i = 0; i < groupseqsnames.size(); i++) {
set<string>::iterator itnamesfile = thisnames1.find(groupseqsnames[i]);
if (itnamesfile == thisnames1.end()){
cout << "missing name " + groupseqsnames[i] << '\t' << allSeqsMap[groupseqsnames[i]] << endl;
}
}
+
m->mothurOutEndLine();
m->mothurOut("[ERROR]: Your name file contains " + toString(countName) + " valid sequences, and your groupfile contains " + toString(groupMap->getNumSeqs()) + ", please correct.");
m->mothurOutEndLine();
}
}else {
+ //m->mothurOut("Group " + g + " contains " + toString(seqForThisGroup.size()) + " unique seqs.\n");
for (int i = 0; i < seqForThisGroup.size(); i++) {
if(m->control_pressed) { out.close(); m->mothurRemove(filename); return 1; }