* to set and get these values for the other classes where they are needed. *
*
*/
-using namespace std;
#include "mothur.h"
void setPairwise(string);
void setAligned(string);
void setLength();
+ void reverseComplement();
string convert2ints();
string getName();
private:
void initialize();
+ string getSequenceString(ifstream&);
+ string getCommentString(ifstream&);
string name;
string unaligned;
string aligned;