added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index 904e25aeb7a5b4d3476df576217d12820f95f358..f6d7c869853a17808d8d894466f3d473b18c13d8 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -13,7 +13,6 @@
  *     to set and get these values for the other classes where they are needed.  *
  *
  */
-using namespace std;
 
 #include "mothur.h"
 
@@ -49,6 +48,8 @@ public:
        
 private:
        void initialize();
+       string getSequenceString(ifstream&);
+       string getCommentString(ifstream&);
        string name;
        string unaligned;
        string aligned;