*
*/
+
+//Data Structure for a fasta file.
+
#include "mothur.h"
#include "mothurout.h"
Sequence(string, string);
Sequence(ifstream&);
Sequence(istringstream&);
-
//these constructors just set the unaligned string to save space
Sequence(string, string, string);
Sequence(ifstream&, string);
private:
MothurOut* m;
void initialize();
- string getSequenceString(ifstream&);
+ string getSequenceString(ifstream&, int&);
string getCommentString(ifstream&);
- string getSequenceString(istringstream&);
+ string getSequenceString(istringstream&, int&);
string getCommentString(istringstream&);
string name;
string unaligned;