fixed memory leak in maligner minCoverageFilter function used by chimera slayer

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index 95c3e51839029393798dc2f57848d5e325c6c2df..48287af367092715ab999b9ffabf02229c68cacc 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -37,6 +37,7 @@ public:
        void setAligned(string);
        void setLength();
        void reverseComplement();
+       void trim(int);
        
        string convert2ints();
        string getName();
@@ -48,6 +49,7 @@ public:
        int getEndPos();
        int getAlignLength();
        int getAmbigBases();
+       void removeAmbigBases();
        int getLongHomoPolymer();
        bool getIsAligned();
        void printSequence(ostream&);