worked on trim.seqs

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index f48bf13dc98d034cea520cf78b09124fff30cb33..21b4c3874c9ccb1f5ab9eab31fe78fbd7f0a40c6 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -24,6 +24,7 @@ public:
        Sequence();
        Sequence(string, string);
        Sequence(ifstream&);
+       Sequence(istringstream&);
        
        void setName(string);
        void setUnaligned(string);
@@ -46,11 +47,16 @@ public:
        bool getIsAligned();
        void printSequence(ostream&);
        
+       int MPISend(int); //not working at the moment...
+       int MPIRecv(int); //not working at the moment...
+       
 private:
        MothurOut* m;
        void initialize();
        string getSequenceString(ifstream&);
        string getCommentString(ifstream&);
+       string getSequenceString(istringstream&);
+       string getCommentString(istringstream&);
        string name;
        string unaligned;
        string aligned;