Sequence();
Sequence(string, string);
Sequence(ifstream&);
+ Sequence(istringstream&);
void setName(string);
void setUnaligned(string);
bool getIsAligned();
void printSequence(ostream&);
+ int MPISend(int); //not working at the moment...
+ int MPIRecv(int); //not working at the moment...
+
private:
MothurOut* m;
void initialize();
string getSequenceString(ifstream&);
string getCommentString(ifstream&);
+ string getSequenceString(istringstream&);
+ string getCommentString(istringstream&);
string name;
string unaligned;
string aligned;